QuantWorm : Quantitative phenotyping of C. elegans

QuantWorm is a software package for automatic phenotyping in C. elegans.

Tool Download

Software Function Download Reference Notes / User manual
WormScanner Acquisition of Images and/or Videos.
(It uses video and stage components from
WormTracker 2. Due to their license
restrictions, please download their software
directly from their website, see instructions).
software
instructions
Jung et al.,
PLoS One, 2014

User manual
(PDF)


Experimental
protocols (PDF)
WormLength Analysis of worm length software, sample
WormLifespan Analysis of worm life-span software, sample
WormEgg Analysis of worm egg software, sample
WormLocomotion Analysis of worm locomotion software, sample,
simulation
WormGender Analysis of worm gender software, sample, installation Labocha et al.,
PLoS One, 2015
WormCounter Analysis to count worms in a chemotaxis assay software, sample -
WormTrapAssay Analysis to count worms in a chemotaxis
trap assay
software, sample -
MaggotTracker Analysis of fly larval locomotion software Aleman-Meza et al., BMC
Developmental Biology, 2015
User
manual

Data Download

We have used QuantWorm in the following large scale studies:

Study Link to Database Reference
Nanoparticle Toxicity link Jung et al., Environ Sci Technol, 2015
Genetic Interactions - -
Worm Alarm Pheromone - -
C. elegans Locomotion link Yu et al., Proc Natl Acad Sci USA, 2013
D. melanogaster Locomotion link -

Software License: Software is licensed under Academic Free License (AFL) with the following restriction: QuantWorm software is licensed only for non-commercial purposes.

Zhong's lab.
Contact: Boanerges Aleman-Meza (mag AT wormloco.org).
Last update on 9/30/2015